Preview

Izvestia Sankt-Peterburgskoj lesotehniceskoj akademii

Advanced search

Analysis of the polymorphism of microsatellite loci in Picea abies (L.) H. Karst. and Picea obovatа Ledeb populations

https://doi.org/10.21266/2079-4304.2021.237.97-108

Abstract

The processes of genesis of coniferous forests are widely investigating using molecular markers. Many studies are based on the analysis of microsatellite loci, which are acknowledged as the most reproducible and polymorphic co-dominant molecular markers. This study is aimed to establish the possibility of using microsatellite markers to determine differentiation between Norway and Siberian spruce (Picea abies and Picea obovata). Another task of this research was to assess the degree of genetic isolation of regional spruce population in the territory of European part of the Russian Federation. This study shows that using a large number of microsatellite markers allows to divide the sample of spruce collected from European part of Russia and Siberia in two genetic clusters, corresponding to Picea abies and Picea obovata. The microsatellite loci analyzed in the study can be used to assess genetic diversity and geographic origin of spruce trees and determine the origin of wood and planting material of Norway and Siberian spruce.

About the Authors

V. A. Volkov
St.Petersburg State Forest Technical University
Russian Federation

VOLKOV Vladimir A. – PhD student

194021. Institute per. 5. St. Petersburg



G. V. Kalko
Saint-Petersburg forestry research institute
Russian Federation

KALKO Galina V. – head of the research laboratory

194021. Institutsky per. 21. St. Petersburg



References

1. Acheré V. et al. A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers. Theoretical and Applied Genetics, 2004, vol. 108, no. 8, pp. 1602–1613.

2. Bousquet J., Simon L., Lalonde M. DNA amplification from vegetative and sexual tissues of trees using polymerase chain reaction. Canadian journal of forest research, 1990, vol. 20, no. 2, pp. 254–257.

3. Ehkart A.K. et al. The use of genetic markers of various types for evaluation of intraspecific differentiation level of the Siberian spruce. Siberian Journal of Forest Science, 2014. (In Russ.)

4. Eusemann, P. et al Three microsatellite multiplex PCR assays allowing high resolution genotyping of white spruce, Picea glauca. Silvae Genetica, 2014. December, vol. 53(5), pp. 230–234. DOI 10.1515/sg–2014-0029.

5. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular ecology, 2005, vol. 14, no. 8, pp. 2611–2620.

6. Fluch S. et al. Characterization of variable EST SSR markers for Norway spruce (Picea abies L.). BMC Research notes, 2011, vol. 4, no. 1, pp. 1–6.

7. Hart D.L., Clark A.G. Principles of population genetics Sinauer associates Sunderland. Massachusetts, 1997. 116 p.

8. Melnikova M.N. et al. Testing of microsatellite primers with different populations of Eurasian spruces Picea abies (L.) Karst. and Picea obovata Ledeb. Russian journal of genetics, 2012, vol. 48, no. 5, pp. 562–566. (In Russ.)

9. Peakall R.O.D., Smouse P.E. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular ecology notes, 2006, vol. 6, no. 1, pp. 288–295.

10. Pfeiffer А., Olivieri A.M., Morgante M. Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome, 1997, vol. 40, pp. 411–419.

11. Potokina E.K. et al. Analysis of the polymorphism of organelle DNA to elucidate the phylogeography of Norway spruce in the East European Plain. Russian Journal of Genetics: Applied Research, 2015, vol. 5, no. 4, pp. 430–439. (In Russ.)

12. Potokina E.K. et al. Genetic differentiation of spruce populations in northwest Russia according to the results of microsatellite loci analysis. Russian Journal of Genetics: Applied Research, 2013, vol. 3, no. 5, pp. 352–360. (In Russ.)

13. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics, 2000, vol. 155, no. 2, pp. 945–959.

14. Rungis D. et al. Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags. Theor. Appl. Genet, 2004, vol. 109 (6), pp. 1283–1294. ISSN 0040-5752.

15. Scotti I. et al. Microsatellite repeats are not randomly distributed within Norway spruce (Picea abies K.) expressed sequences. Genome, 2000, vol. 43 (1), pp. 41–46. ISSN 0831-2796.

16. Scotti I. et al. Trinucleotide microsatellites in Norway spruce (Picea abies): their features and the development of molecular markers. Theoretical and Applied Genetics, 2002, vol. 106, no. 1, pp. 40–50.

17. Tsuda Y. et al. The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west? Molecular Ecology, 2016, vol. 25, no. 12, pp. 2773–2789.

18. Wright S. The genetical structure of populations. Annals of Eugenics, 1951, vol. 15 (4), pp. 323–354. ISSN 0003-4800.168.

19. Wright S. The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 1965, vol. 19, pp. 395–420. Online ISSN 1558-5646


Review

For citations:


Volkov V.A., Kalko G.V. Analysis of the polymorphism of microsatellite loci in Picea abies (L.) H. Karst. and Picea obovatа Ledeb populations. Izvestia Sankt-Peterburgskoj lesotehniceskoj akademii. 2021;(237):97-108. (In Russ.) https://doi.org/10.21266/2079-4304.2021.237.97-108

Views: 84


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 2079-4304 (Print)
ISSN 2658-5871 (Online)